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Mosi76 Try backing up again via ssh on the server...not via ftp client. Then reupload all files, make the change to inc/header.inc.php file.to point to your new domain folder. Delete all cache files from the cache folders. Login and clear all cache via dashboard.
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Jeremy - thanks for the tips. I ended up just walking away for a few hours and tried to forget about it for a while and when I came back to respond to LeonidS I noticed that a couple pages that were broken earlier were working again so I just gave it some more time and eventually everything sorted out.
Thanks again for helping out. I really appreciate it
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